Segmentation/ Feature extraction has been redone by Erin in Cimini Lab.
Profile creation has been redone by Erin in Cimini Lab.
Data can be public in RODA Immediately
[x] Metadata completely filled out in Project Profiler Database (Imaging Platform internal use only)
[x] Segmentation/Feature extraction complete
[x] Profiling complete
Transfer to CellPainting Gallery:
[x] Upload data to RODA (is private by default)
[ ] Run validation script to ensure completion
[x] Update cellpainting-gallery/README.md
[ ] Make RODA entry public
If data is being published, prepare for publication:
~- [ ] Run Distributed-BioFormats2Raw to create .ome.zarr files~
~- [ ] Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).~
Once published:
~- [ ] Make IDR entry public~
[ ] Update cellpainting-gallery/README.md and open-data-registry/cellpainting-gallery.yml to reflect publication
Segmentation/ Feature extraction has been redone by Erin in Cimini Lab. Profile creation has been redone by Erin in Cimini Lab. Data can be public in RODA Immediately
Update as generated:
Profile repo for image reprocessing: https://github.com/broadinstitute/cpg0017-rohban-pathways Publication repo for initial image processing: https://github.com/carpenterlab/2017_rohban_elife
cpg0017-rohban-pathwaysTransfer to CellPainting Gallery:
If data is being published, prepare for publication: ~- [ ] Run Distributed-BioFormats2Raw to create .ome.zarr files~ ~- [ ] Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).~
Once published: ~- [ ] Make IDR entry public~