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broadinstitute / cellpainting-gallery

Cell Painting Gallery
https://broadinstitute.github.io/cellpainting-gallery/
MIT License
64 stars 11 forks source link

2020_11_04_CPJUMP1 (cpg0000-jump-pilot) #28

Closed AlaaBessadok closed 1 year ago

AlaaBessadok commented 1 year ago

Hello, I would like to download the dataset cpg0000-jump-pilot to work on the 300+ compounds. My question is where to find the name of the compounds (is there a csv file for that) and is there an information about cell death modality induced by those 300+compounds (such as necrosis, apoptosis)? Many thanks in advance!

ErinWeisbart commented 1 year ago

Hi @AlaaBessadok. In general, you can find a thorough overview of what data can be found within our cellpainting-gallery datasets in folder_structure.md along with information about how to download specific components. I'll point you to https://github.com/jump-cellpainting/datasets for information specific to the JUMP datasets. Please re-ask your question there. (I'm sorry I can't transfer the question for you as we use a different GitHub Organization for the JUMP datasets). (We're still finishing up our documentation for both the cellpainting-gallery in general and the JUMP datasets in particular, so I apologize if it's not quite clear yet where to ask questions or find all of the data. Thanks for your understanding.)

AlaaBessadok commented 1 year ago

Hi @ErinWeisbart Thanks for your response, I already check several datasets but could not find one with labels per images (maybe I am wrong...)