cpg0014-jump-adipocyte - Githubissues

broadinstitute / cellpainting-gallery

Cell Painting Gallery

https://broadinstitute.github.io/cellpainting-gallery/

MIT License

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cpg0014-jump-adipocyte #30

Closed ErinWeisbart closed 10 months ago

ErinWeisbart commented 1 year ago

Segmentation/ Feature extraction is being performed by Erin in Cimini lab Profile creation is being performed by Erin in Cimini lab Data can be public in RODA Immediately

Update as generated:
profiler repo = https://github.com/jump-cellpainting/cpg0014-JUMP-adipocyte [Link to publication repo]
cellpainting-gallery identifier = cpg0014-jump-adipocyte

[ ] Metadata collection form filled out by collaborator or Imaging Platform member (https://airtable.com/shrVxz9DcoMlDoCBI)
[ ] Metadata completely filled out in Project Profiler Database (Imaging Platform internal use only)
[x] Segmentation/Feature extraction complete
[ ] Profiling complete

Transfer to CellPainting Gallery:

[x] Upload data to RODA (is private by default)
[ ] Run validation script to ensure completion (https://github.com/jump-cellpainting/data-validation)
[ ] Update cellpainting-gallery/README.md
[ ] Make RODA entry public

If data is being published, prepare for publication:

[ ] Run Distributed-BioFormats2Raw to create .ome.zarr files
[ ] Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).

Once published:

[ ] Make IDR entry public
[ ] Update cellpainting-gallery/README.md and open-data-registry/cellpainting-gallery.yml to reflect publication