2023_03_21_Dactyloscopy (cpg0025)

[shntnu]

Segmentation/ Feature extraction is being performed by (Cimini lab / Carpenter-Singh lab)
Profile creation is being performed by (Cimini lab / Carpenter-Singh lab)
Data can be public in RODA Immediately

Update as generated:
[Link to profile repo]
[Link to publication repo]
cellpainting-gallery identifier: cpg0025

• [ ] Metadata collection form filled out by collaborator or Imaging Platform member (https://airtable.com/shrVxz9DcoMlDoCBI)
• [ ] Metadata completely filled out in Project Profiler Database (Imaging Platform internal use only)
• [ ] Segmentation/Feature extraction complete
• [ ] Profiling complete

Transfer to CellPainting Gallery:

• [ ] Upload data to RODA (is private by default)
• [ ] Run validation script to ensure completion (https://github.com/jump-cellpainting/data-validation)
• [ ] Update cellpainting-gallery/README.md
• [ ] Make RODA entry public

If data is being published, prepare for publication:

• [ ] Run Distributed-BioFormats2Raw to create .ome.zarr files
• [ ] Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).

Once published:

• [ ] Make IDR entry public
• [ ] Update cellpainting-gallery/README.md and open-data-registry/cellpainting-gallery.yml to reflect publication
• [ ] Move this Issue from cellpainting-gallery-private to cellpainting-gallery. This step can be performed at an earlier point if it needs inputs from an external collaborator.

[shntnu]

• [x] Sync to S3 (in progress on login01)
• [x] Delete on /imaging/analysis
• [x] Update spreadsheet

Sync

aws s3 sync \
  --dryrun \
  /imaging/analysis/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/2018_02_24_DACTYL/images/ \
  s3://cellpainting-gallery/cpg0025-dactyloscopy/broad/images/2018_02_24_DACTYL/images/

Delete

 rm -rf \
  imaging/analysis/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/2018_02_24_DACTYL/images/