2023_08_31_Chromalive

[shntnu]

Segmentation/ Feature extraction is being performed by (Cimini lab / Carpenter-Singh lab)
Profile creation is being performed by (Cimini lab / Carpenter-Singh lab)
Data can be public in RODA Immediately

Update as generated:
[Link to profile repo]
[Link to publication repo]
cellpainting-gallery identifier: cpg0029-chroma-pilot

• [ ] Metadata collection form filled out by collaborator or Imaging Platform member (https://airtable.com/shrVxz9DcoMlDoCBI)
• [ ] Metadata completely filled out in Project Profiler Database (Imaging Platform internal use only)
• [ ] Segmentation/Feature extraction complete
• [ ] Profiling complete

Transfer to CellPainting Gallery:

• [ ] Upload data to RODA (is private by default) --> public in this case
• [ ] Run validation script to ensure completion (https://github.com/jump-cellpainting/data-validation)
• [ ] Update cellpainting-gallery/README.md
• [ ] Make RODA entry public --> will already be public

If data is being published, prepare for publication:

• [ ] Run Distributed-BioFormats2Raw to create .ome.zarr files
• [ ] Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).

Once published:

• [ ] Make IDR entry public
• [ ] Update cellpainting-gallery/README.md and open-data-registry/cellpainting-gallery.yml to reflect publication
• [ ] Move this Issue from cellpainting-gallery-private to cellpainting-gallery. This step can be performed at an earlier point if it needs inputs from an external collaborator.