Write README for cellpainting-gallery GitHub repo

[shntnu]

Update: I've moved this Q to https://github.com/jump-cellpainting/aws/issues/62#issuecomment-1159580088; let's discuss it there.

Once this PR is merged, we can tag Erin Chu in https://github.com/awslabs/open-data-registry/pull/1003#event-6834149376 to review that PR.

Erin Chu has already merged that PR 🎉

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@ErinWeisbart

I made some edits, mostly cleanup and adding some citations.

What do you think of splitting out jump-pilot/source_4 – which comprises all the jump-pilots from Broad - into two parts (or maybe 3 parts):

• Plates used in https://www.biorxiv.org/content/10.1101/2022.01.05.475090v1
• Plates used in Cell Painting protocol update
• Plates used in the upcoming CP-scope paper

That has two advantages

• Clean split across papers
• good opportunity to give jump-pilot a proper cpgNNNN-XXXX name

[ErinWeisbart]

I updated README with jump-pilots split as per discussion above.

We still need:

• One sentence description of jump-pilot, cellpainting-protocol, and jump-scope datasets.
• We have several papers listed as publications using datasets in the gallery that don't point to a specific dataset. Should these be removed? Or the datasets added to the gallery? Or are they point to datasets that are currently embargoed (and if so can we add the dataset name now)?
  • Gustafsdottir 2013
  • Singh 2015
  • Bray 216
  • Rahban 2017
  • Caicedo 2022

[shntnu]

Thanks, @ErinWeisbart – now fixed. Have a look a feel free to merge

[ErinWeisbart]

You've written the cell type as U2-OS. I'm changing it to U2OS as I think that's more commonly used (and then U-2 OS and then U2-OS FWIW), if that's okay?

One final question - for citation, it currently just tells users to cite the initial publication of whatever dataset they use. Do we also want to ask users to cite the gallery on RODA?

[shntnu]

You've written the cell type as U2-OS. I'm changing it to U2OS as I think that's more commonly used (and then U-2 OS and then U2-OS FWIW), if that's okay?

Perfect

One final question - for citation, it currently just tells users to cite the initial publication of whatever dataset they use. Do we also want to ask users to cite the gallery on RODA?

So glad you pointed this out! Now added