broadinstitute / cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

http://cromwell.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

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CWL Feature: InlineJavascriptRequirement #2995

Closed kshakir closed 6 years ago

kshakir commented 6 years ago

Link to specs:

http://www.commonwl.org/v1.0/CommandLineTool.html#InlineJavascriptRequirement
http://www.commonwl.org/v1.0/Workflow.html#InlineJavascriptRequirement

Example conformance tests:

#16 v1.0/null-expression1-tool.cwl
#17 v1.0/null-expression2-tool.cwl
#52 v1.0/wc4-tool.cwl (Parses file contents in JS)

A/C: These or similar CWL should run to WorkflowSucceeded via centaur Bonus: CWL conformance test passes (may also be a future ticket)

danbills commented 6 years ago

We plan to support only the expressionLib declaration with this requirement.

3058 is created to support the stipulation that expressions should not be evaluated if this requirement is missing