option to make cromwell-execution folder have same path as in host filesystem

broadinstitute / cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

http://cromwell.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

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option to make cromwell-execution folder have same path as in host filesystem #3376

Open antonkulaga opened 6 years ago

antonkulaga commented 6 years ago

Files inside containers in cromwell have pathes like "/cromwell-executions/quantification/46be867d-ce74-4a6a-ac01-60041010051a/call-get_sample/shard-5/execution/Supp_GSM2042596_cattle_kidney_1/SRR3109708_pass_1.fastq.gz" that are different from the original host system pathes. It will be useful to have an option that will sync them

geoffjentry commented 6 years ago

Can you describe more what you're looking for?