Bam to raw fastq fix - Githubissues

broadinstitute / epi-SHARE-seq-pipeline

Epigenomics Program pipeline to analyze SHARE-seq data.

MIT License

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Bam to raw fastq fix #142

Closed mei-knudson closed 12 months ago

mei-knudson commented 1 year ago

Fixing barcode correction in bam_to_raw_fastq.py and correct_fastq.py. I was allowing shifted barcodes to have a one-mismatch tolerance, but shifted barcodes should be exact matches.

mei-knudson commented 12 months ago

Update: also correcting bug in rna_barcode_metadata.py, where total counts are being overcounted