apt-get install nano (or whatever editor you want)
edit code in bash to fix the bug causing failure
rm -r any directories under /opt/execution/pipette_jobs that should not have passed, if any
edit /opt/execution/script (first make a copy of it), deleting lines that are nonidempotent, eg dropping symlinks without checking if they already exist
rm -r /opt/execution/pipette_status
mkdir -p the original root outputdir. the dirname is embedded in /opt/execution/script.
ln -s /opt/execution and /opt/inputs from their original location
steps: