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broadinstitute / firecloud_developer_toolkit

Utilities to help algorithm developers dockerize new tasks, debug them, and put them into Firecloud.
BSD 3-Clause "New" or "Revised" License
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crom - things break when relative path used for setrepodir #6

Open gsaksena opened 7 years ago

gsaksena commented 7 years ago

Either the script should check for an absolute path being passed in, via something like: ${pathname:0:1} == '/' Or the readlink -f needs to be fixed to work on mac to convert to a full path.

also, check other places in crom where a path is passed in