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gatk-evaluation
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As gcnv eval plotting
#23
asmirnov239
closed
4 years ago
0
Changed multi CNV evaluation so that it evaluates CallModeledSegments instead of CallCopyRatioSegments.
#22
MartonKN
opened
5 years ago
0
Added README for pipeline-optimizer.
#21
samuelklee
closed
5 years ago
0
Added example gCNV hyperparameter optimization.
#20
samuelklee
closed
5 years ago
0
Added example gCNV hyperparameter optimization and minor updates to pipeline-optimization.
#19
samuelklee
closed
5 years ago
0
Pipeline optimization using Advisor and Cromwell.
#18
samuelklee
closed
5 years ago
0
Forgot to stage some files
#17
asmirnov239
closed
5 years ago
0
Added gCNV evaluation python module
#16
asmirnov239
closed
5 years ago
0
GATK CNV MS Eval: Updated paths for internal bucket changes and updated GATK version
#15
LeeTL1220
closed
5 years ago
2
Added Docker, R script, and WDL for SFARI gCNV evaluation.
#14
samuelklee
closed
5 years ago
0
Use GATK gCNV to call germline copy number events in the SFARI cohort
#13
asmirnov239
opened
6 years ago
5
Add a CNV evaluation for MAF concordance with PCAWG ground truth
#12
LeeTL1220
opened
6 years ago
0
CNV CRSP and WGS evaluation
#11
LeeTL1220
closed
6 years ago
3
Added CODEX Dockerfile, R script, and python script for VCF conversion.
#10
samuelklee
closed
6 years ago
1
Make concordance scripts for trios
#9
asmirnov239
opened
6 years ago
0
Add plotting scripts for concordance
#8
asmirnov239
opened
6 years ago
0
Build docker and write WDL for running CODEX pipeline
#7
asmirnov239
closed
6 years ago
0
Curate Genome STRiP calls
#6
asmirnov239
opened
6 years ago
0
Write WDL for randomized hyperparameter search
#5
asmirnov239
opened
6 years ago
0
Tune hyperparameters and evaluate performance of GATK gCNV
#4
asmirnov239
opened
6 years ago
3
Adding and streamlining concordance evaluation script
#3
asmirnov239
opened
6 years ago
0
Create gCNV evaluation WDL
#2
asmirnov239
opened
6 years ago
0
Added XHMM wdl and Dockerfil
#1
asmirnov239
closed
6 years ago
1