broadinstitute gatk-evaluation issues

broadinstitute / gatk-evaluation

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As gcnv eval plotting

#23 asmirnov239 closed 4 years ago
0
Changed multi CNV evaluation so that it evaluates CallModeledSegments instead of CallCopyRatioSegments.

#22 MartonKN opened 5 years ago
0
Added README for pipeline-optimizer.

#21 samuelklee closed 5 years ago
0
Added example gCNV hyperparameter optimization.

#20 samuelklee closed 5 years ago
0
Added example gCNV hyperparameter optimization and minor updates to pipeline-optimization.

#19 samuelklee closed 5 years ago
0
Pipeline optimization using Advisor and Cromwell.

#18 samuelklee closed 5 years ago
0
Forgot to stage some files

#17 asmirnov239 closed 5 years ago
0
Added gCNV evaluation python module

#16 asmirnov239 closed 5 years ago
0
GATK CNV MS Eval: Updated paths for internal bucket changes and updated GATK version

#15 LeeTL1220 closed 5 years ago
2
Added Docker, R script, and WDL for SFARI gCNV evaluation.

#14 samuelklee closed 5 years ago
0
Use GATK gCNV to call germline copy number events in the SFARI cohort

#13 asmirnov239 opened 6 years ago
5
Add a CNV evaluation for MAF concordance with PCAWG ground truth

#12 LeeTL1220 opened 6 years ago
0
CNV CRSP and WGS evaluation

#11 LeeTL1220 closed 6 years ago
3
Added CODEX Dockerfile, R script, and python script for VCF conversion.

#10 samuelklee closed 6 years ago
1
Make concordance scripts for trios

#9 asmirnov239 opened 6 years ago
0
Add plotting scripts for concordance

#8 asmirnov239 opened 6 years ago
0
Build docker and write WDL for running CODEX pipeline

#7 asmirnov239 closed 6 years ago
0
Curate Genome STRiP calls

#6 asmirnov239 opened 6 years ago
0
Write WDL for randomized hyperparameter search

#5 asmirnov239 opened 6 years ago
0
Tune hyperparameters and evaluate performance of GATK gCNV

#4 asmirnov239 opened 6 years ago
3
Adding and streamlining concordance evaluation script

#3 asmirnov239 opened 6 years ago
0
Create gCNV evaluation WDL

#2 asmirnov239 opened 6 years ago
0
Added XHMM wdl and Dockerfil

#1 asmirnov239 closed 6 years ago
1