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broadinstitute / gatk-protected

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
BSD 3-Clause "New" or "Revised" License
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Migrate to Nd4j BLAS #1066

Closed mbabadi closed 7 years ago

mbabadi commented 7 years ago

At the time of initial development of gCNV, Nd4j did not provide native implementation of BLAS level-3 functions. Now that we have them (as of nd4j 0.6.0), it is desirable to migrate all BLAS level-3 ops to native Nd4j (as opposed to converting NDArrays to Apache matrices back and forth). This includes LU decomposition and matrix inversion ops.

droazen commented 7 years ago

Issue moved to broadinstitute/gatk #3003 via ZenHub