Closed davidbenjamin closed 7 years ago
Currently we lump together all variant reads and add up the total alt evidence. This classifies too many regions as active. We should tally reads supporting SNVs (of each possible substitution), deletions, and insertions separately.
Issue moved to broadinstitute/gatk #3012 via ZenHub
Currently we lump together all variant reads and add up the total alt evidence. This classifies too many regions as active. We should tally reads supporting SNVs (of each possible substitution), deletions, and insertions separately.