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broadinstitute / gatk-protected

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
BSD 3-Clause "New" or "Revised" License
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Count different kinds of alt reads in M2 isActive #1090

Closed davidbenjamin closed 7 years ago

davidbenjamin commented 7 years ago

Currently we lump together all variant reads and add up the total alt evidence. This classifies too many regions as active. We should tally reads supporting SNVs (of each possible substitution), deletions, and insertions separately.

droazen commented 7 years ago

Issue moved to broadinstitute/gatk #3012 via ZenHub