Fixing a NPE that could come up in cases of multiallelic sites.

broadinstitute / gatk-protected

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead

BSD 3-Clause "New" or "Revised" License

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Closed LeeTL1220 closed 7 years ago

LeeTL1220 commented 7 years ago

Added more tests and fixed another bug (NPE), but new paradigm of only checking the first alt allele is not implemented yet.

Fixing NPE for multiallelic sites.