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broadinstitute / gatk-protected

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
BSD 3-Clause "New" or "Revised" License
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Change docgen field search order. #1105

Closed cmnbroad closed 7 years ago

cmnbroad commented 7 years ago

This works around an issue where the docgen field search code tries to reflect on inaccessible JVM classes such as Throwable, and allows the docgen process to be run locally. This change affects dogcen only.

cmnbroad commented 7 years ago

Fixes https://github.com/broadinstitute/gatk-protected/issues/1048. We'll also make Barclay robust to this since it can still happen in error paths, but we should make this change anyway. Also, it will allow the comms team to look at doc locally, and reduces the runtime of docgen.