Duplicate read filter for cell-free DNA data with UMI

broadinstitute / gatk-protected

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead

BSD 3-Clause "New" or "Revised" License

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Duplicate read filter for cell-free DNA data with UMI #1109

Closed takutosato closed 7 years ago

takutosato commented 7 years ago

@davidbenjamin, I'm going to ask @fleharty to review this one. @fleharty, I'm going to add a test for the change I made in GATKProtectedVariantContextUtils.java::getAttributeAsInt on Tuesday, but that shouldn't affect the rest of the code.

droazen commented 7 years ago

@takutosato Migration instructions for this branch: https://github.com/broadinstitute/gatk/wiki/Migrating-branches-from-gatk-protected-to-gatk

takutosato commented 7 years ago

@fleharty @pshapiro4broad thanks for reviewing. I'm going to migrate the branch to gatk public and make a new PR there.

takutosato commented 7 years ago

migrated to broadinstitute/gatk#3134