This sets the minimum base quality to consider a base in the assembly graph. By default it's 10, but in practice anything under 20 is usually junk. We could probably get a performance boost just by running Mutect with a higher value than the default.
This sets the minimum base quality to consider a base in the assembly graph. By default it's 10, but in practice anything under 20 is usually junk. We could probably get a performance boost just by running Mutect with a higher value than the default.