Add command line/program to generated VCFs.

broadinstitute / gatk-protected

Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead

BSD 3-Clause "New" or "Revised" License

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Add command line/program to generated VCFs. #1115

Closed cmnbroad closed 7 years ago

cmnbroad commented 7 years ago

This covers only tools that are already CommandLineProgram-derived (including HaplotypeCaller/Spark, Mutect2, GenotypeGVCF). Requires a GATK public upgrade.

droazen commented 7 years ago

:+1: merge when ready