Question about chm13 reference

broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing

https://broadinstitute.github.io/gatk-sv/

BSD 3-Clause "New" or "Revised" License

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Question about chm13 reference #526

Open KeqingWangg opened 1 year ago

KeqingWangg commented 1 year ago

Hi!

Thank you for sharing this extraordinary pipeline. Tried with some samples and the outcomes were amazingly satisfactory.

As we are planning to switch to analysis based on the new version of human reference genome. I am wondering if generating a reference resource set for T2T-CHM13v2.0 version of human reference genome is part of your development plan?

Looking forward to you response! Many thanks!

Keqing

mwalker174 commented 5 months ago

Hi @KeqingWangg thanks for your question. We are not planning on supporting T2T at this time although the pipeline could be modified to run on it with some effort.