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broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing
BSD 3-Clause "New" or "Revised" License
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GPG (GNU Privacy Guard) key verification failed for two repos when trying to create custom melt docker image #556

Open am8265 opened 1 year ago

am8265 commented 1 year ago

Dear Authors,

The error below is being triggered during building docker image from gatksv/sv-base:b3af2e3 to build MELT docker image specifically while updating RUN apt-get -qqy dist-upgrade &&

W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu bionic-cran35/ InRelease: The following signatures were invalid: EXPKEYSIG 51716619E084DAB9 Michael Rutter <marutter@gmail.com>
E: The repository 'http://cran.rstudio.com/bin/linux/ubuntu bionic-cran35/ InRelease' is not signed.
W: GPG error: https://packages.cloud.google.com/apt cloud-sdk-bionic InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY B53DC80D13EDEF05
E: The repository 'https://packages.cloud.google.com/apt cloud-sdk-bionic InRelease' is not signed.

Note: i changed ARG SVBASE_IMAGE=sv-base:latest to gatksv/sv-base:b3af2e3, because sv-base:latest never existed.

Would appreciate your solution to this. Possibly we might need new keys.

Thanks !

mwalker174 commented 2 months ago

This happens occasionally. In order to update the certs you need to rebuild all the base images. We could think about adding cert updates to all our Dockerfiles to avoid this though.