broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing
BSD 3-Clause "New" or "Revised" License
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Annotate GD region overlap in AnnotateVcf #660

Open epiercehoffman opened 3 months ago

epiercehoffman commented 3 months ago

We want to add GD region overlap to the INFO field. It seems to make sense to do this in AnnotateVcf, probably within SVAnnotate. We could add a separate reference resource input specifically for GD regions, or we could make the noncoding bed file input into a flexible bed file input for which the user can specify the names of the INFO fields.