broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing
BSD 3-Clause "New" or "Revised" License
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Add support for annotating external AF from multiple datasets #678

Open epiercehoffman opened 1 month ago

epiercehoffman commented 1 month ago

Currently only one external dataset can be provided to AnnotateVcf for external AF annotation. We should expand this functionality to be able to annotate external AFs from multiple datasets in a single run of AnnotateVcf. Preferably we would rewrite the variant matching and external AF annotation workflow to make this more efficient at the same time