Set the default disk size in AnnotateIntervals as a function of input files size

broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing

BSD 3-Clause "New" or "Revised" License

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Set the default disk size in AnnotateIntervals as a function of input files size #682

Closed VJalili closed 1 month ago

VJalili commented 1 month ago

The AnnotateIntervals, called as part of the TrainGCNV workflow, is running out of disk on ToA. The default disk size is set to a fixed value, 10 GiB. This PR updates that to be computed as a function of input files size.

Tested successfully on GCP: 45d20c60-8a80-47c7-8298-c77f2d3d18d1