broadinstitute / gatk-sv

A structural variation pipeline for short-read sequencing
BSD 3-Clause "New" or "Revised" License
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Deprecate single-batch Terra configs #689

Closed epiercehoffman closed 3 weeks ago

epiercehoffman commented 3 weeks ago

Updates

Terra now supports the creation and use of sample_set_sets containing a single sample_set. This allows us to remove the separate workflow configurations for single-batch cohorts and use a single set of input configurations that assume a sample_set_set, which will be simpler for users and for us as maintainers. This PR removes the single-batch JSON templates and updates the Terra dashboard to reflect those changes.

Testing