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broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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Put expected outputs for benchmark data online somewhere #1913

Closed lbergelson closed 4 years ago

lbergelson commented 8 years ago

Gatk performance work, do we have output files included in our data bucket? We need to add those so people can compare.

ldgauthier commented 4 years ago

There are clonable, reproducible workflows and expected outputs in the featured workspace: https://app.terra.bio/#workspaces/help-gatk/GATK4-Germline-Preprocessing-VariantCalling-JointCalling/data Admittedly the data is downsampled, but I think this is enough to compare results. @lbergelson you can reopen if you disagree.