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broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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Port fix 1475 from GATK3 #2893

Closed droazen closed 4 years ago

droazen commented 7 years ago

@SHuang-Broad commented on Tue Sep 13 2016

Here, but the alt allele removal functions must be ported to protected first, preferably by the original author @vruano.

davidbenjamin commented 4 years ago

GATK4 currently does not have this issue.