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broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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Check for google-cloud-sdk compatibility with GATK in launcher #3649

Open chandrans opened 7 years ago

chandrans commented 7 years ago

Feature request

Tool(s) involved

GATK4 launcher

Description

Add check in the launcher to make sure the google-cloud-sdk is compatible with GATK4.

This Issue was generated from your forums

lbergelson commented 7 years ago

There's currently no check that the version of gcloud that's installed is compatible with the version of gatk-launch, the task here is to:

  1. determine which versions of gcloud are compatible with us
  2. add a check and a helpful warning if the system gcloud is out of date in a way which will cause problems