droazen
commented
4 years ago @elbakrifz The error is telling you that the sequence dictionary for your bam file does not match the sequence dictionary for your reference -- are you using the right reference?
Also, you are running GATK 3, which we no longer officially support. This repository is for GATK 4 issues only.
I was running this command : java -Xmx4G -jar /Users/mac/Desktop/GenomeAnalysisTK-3.8-0-ge9d806836\ 4/GenomeAnalysisTK.jar \ -T IndelRealigner \ -R /Users/mac/Desktop/NGS-/TriTrypDB-47_LmajorLV39c5_Genome.fasta \ -I /Users/mac/Desktop/NGS-/marked_duplicates42-pe.bam \ -targetIntervals /Users/mac/Desktop/NGS-/42-pe-realigner.intervals \ -o /Users/mac/Desktop/NGS-/42-pe-idelsrealigner.bam
I get :INFO 10:47:54,213 HelpFormatter - ---------------------------------------------------------------------------------- INFO 10:47:54,223 HelpFormatter - The Genome Analysis Toolkit (GATK) v3.8-0-ge9d806836, Compiled 2017/07/28 21:26:50 INFO 10:47:54,224 HelpFormatter - Copyright (c) 2010-2016 The Broad Institute INFO 10:47:54,224 HelpFormatter - For support and documentation go to https://software.broadinstitute.org/gatk INFO 10:47:54,225 HelpFormatter - [Tue Sep 08 10:47:54 WEST 2020] Executing on Mac OS X 10.15.6 x86_64 INFO 10:47:54,225 HelpFormatter - Java HotSpot(TM) 64-Bit Server VM 1.8.0_65-b17 INFO 10:47:54,229 HelpFormatter - Program Args: -T IndelRealigner -R /Users/mac/Desktop/NGS-/TriTrypDB-47_LmajorLV39c5_Genome.fasta -I /Users/mac/Desktop/NGS-/marked_duplicates42-pe.bam -targetIntervals /Users/mac/Desktop/NGS-/42-pe-realigner.intervals -o /Users/mac/Desktop/NGS-/42-pe-idelsrealigner.bam INFO 10:47:54,492 HelpFormatter - Executing as mac@MacBook-Air-de-mac.local on Mac OS X 10.15.6 x86_64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_65-b17. INFO 10:47:54,493 HelpFormatter - Date/Time: 2020/09/08 10:47:54 INFO 10:47:54,494 HelpFormatter - ---------------------------------------------------------------------------------- INFO 10:47:54,494 HelpFormatter - ---------------------------------------------------------------------------------- ERROR StatusLogger Unable to create class org.apache.logging.log4j.core.impl.Log4jContextFactory specified in jar:file:/Users/mac/Desktop/GenomeAnalysisTK-3.8-0-ge9d806836%204/GenomeAnalysisTK.jar!/META-INF/log4j-provider.properties ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... INFO 10:47:55,875 GenomeAnalysisEngine - Deflater: IntelDeflater INFO 10:47:55,876 GenomeAnalysisEngine - Inflater: IntelInflater INFO 10:47:55,876 GenomeAnalysisEngine - Strictness is SILENT INFO 10:47:56,246 GenomeAnalysisEngine - Downsampling Settings: No downsampling INFO 10:47:56,255 SAMDataSource$SAMReaders - Initializing SAMRecords in serial INFO 10:47:56,333 SAMDataSource$SAMReaders - Done initializing BAM readers: total time 0.07
ERROR ------------------------------------------------------------------------------------------
ERROR A USER ERROR has occurred (version 3.8-0-ge9d806836):
ERROR
ERROR This means that one or more arguments or inputs in your command are incorrect.
ERROR The error message below tells you what is the problem.
ERROR
ERROR If the problem is an invalid argument, please check the online documentation guide
ERROR (or rerun your command with --help) to view allowable command-line arguments for this tool.
ERROR
ERROR Visit our website and forum for extensive documentation and answers to
ERROR commonly asked questions https://software.broadinstitute.org/gatk
ERROR
ERROR Please do NOT post this error to the GATK forum unless you have really tried to fix it yourself.
ERROR
ERROR MESSAGE: Input files reads and reference have incompatible contigs. Please see https://software.broadinstitute.org/gatk/documentation/article?id=63for more information. Error details: No overlapping contigs found.
ERROR reads contigs = [LmjF04_01_20050601_V5.2, LmjF05_01_20050601_V5.2, LmjF24_01_20050601_V5.2, LmjF01_01_20050601_V5.2, LmjF03_01_20050601_V5.2, LmjF13_01_20050601_V5.2, LmjF14_01_20050601_V5.2, LmjF19_01_20050601_V5.2, LmjF21_01_20050601_V5.2, LmjF23_01_20050601_V5.2, LmjF10_01_20050601_V5.2, LmjF11_01_20050601_V5.2, LmjF15_01_20050601_V5.2, LmjF18_01_20050601_V5.2, LmjF02_01_20050601_V5.2, LmjF25_01_20050601_V5.2, LmjF27_01_20050601_V5.2, LmjF28_01_20050601_V5.2, LmjF29_01_20050601_V5.2, LmjF30_01_20050601_V5.2, LmjF31_01_20050601_V5.2, LmjF32_01_20050601_V5.3, LmjF33_01_20050601_V5.2, LmjF34_01_20050601_V5.2, LmjF35_01_20050601_V5.2, LmjF36_01_20050601_V5.2, LmjF07_01_20050601_V5.2, LmjF08_01_20050601_V5.2, LmjF09_01_20050601_V5.2, LmjF06_01_20050601_V5.2, LmjF12_01_20050601_V5.2, LmjF16_01_20050601_V5.2, LmjF17_01_20050601_V5.2, LmjF20_01_20050601_V5.2, LmjF22_01_20050601_V5.2, LmjF26_01_20050601_V5.2]
ERROR reference contigs = [LmjLV39_01, LmjLV39_02, LmjLV39_03, LmjLV39_04, LmjLV39_05, LmjLV39_06, LmjLV39_07, LmjLV39_08, LmjLV39_09, LmjLV39_10, LmjLV39_11, LmjLV39_12, LmjLV39_13, LmjLV39_14, LmjLV39_15, LmjLV39_16, LmjLV39_17, LmjLV39_18, LmjLV39_19, LmjLV39_20, LmjLV39_21, LmjLV39_22, LmjLV39_23, LmjLV39_24, LmjLV39_25, LmjLV39_26, LmjLV39_27, LmjLV39_28, LmjLV39_29, LmjLV39_30, LmjLV39_31, LmjLV39_32, LmjLV39_33, LmjLV39_34, LmjLV39_35, LmjLV39_36, LMJLV39_SCAF000001, LMJLV39_SCAF000002, LMJLV39_SCAF000003, LMJLV39_SCAF000004, LMJLV39_SCAF000005, LMJLV39_SCAF000006, LMJLV39_SCAF000007, LMJLV39_SCAF000008, LMJLV39_SCAF000009, LMJLV39_SCAF000010, LMJLV39_SCAF000011, LMJLV39_SCAF000012, LMJLV39_SCAF000013, LMJLV39_SCAF000014, LMJLV39_SCAF000015, LMJLV39_SCAF000016, LMJLV39_SCAF000017, LMJLV39_SCAF000018, LMJLV39_SCAF000019, LMJLV39_SCAF000020, LMJLV39_SCAF000021, LMJLV39_SCAF000022, LMJLV39_SCAF000023, LMJLV39_SCAF000024, LMJLV39_SCAF000025, LMJLV39_SCAF000026, LMJLV39_SCAF000027, LMJLV39_SCAF000028, LMJLV39_SCAF000029, LMJLV39_SCAF000030, LMJLV39_SCAF000031, LMJLV39_SCAF000032, LMJLV39_SCAF000033, LMJLV39_SCAF000034, LMJLV39_SCAF000035, LMJLV39_SCAF000036, LMJLV39_SCAF000037, LMJLV39_SCAF000038, LMJLV39_SCAF000039, LMJLV39_SCAF000040, LMJLV39_SCAF000041, LMJLV39_SCAF000042, LMJLV39_SCAF000043, LMJLV39_SCAF000044, LMJLV39_SCAF000045, LMJLV39_SCAF000046, LMJLV39_SCAF000047, LMJLV39_SCAF000048, LMJLV39_SCAF000049, LMJLV39_SCAF000050, LMJLV39_SCAF000051, LMJLV39_SCAF000052, LMJLV39_SCAF000053, LMJLV39_SCAF000054, LMJLV39_SCAF000055, LMJLV39_SCAF000056, LMJLV39_SCAF000057, LMJLV39_SCAF000058, LMJLV39_SCAF000059, LMJLV39_SCAF000060, LMJLV39_SCAF000061, LMJLV39_SCAF000062, LMJLV39_SCAF000063, LMJLV39_SCAF000064, LMJLV39_SCAF000065, LMJLV39_SCAF000066, LMJLV39_SCAF000067, LMJLV39_SCAF000068, LMJLV39_SCAF000069, LMJLV39_SCAF000070, LMJLV39_SCAF000071, LMJLV39_SCAF000072, LMJLV39_SCAF000073, LMJLV39_SCAF000074, LMJLV39_SCAF000075, LMJLV39_SCAF000076, LMJLV39_SCAF000077, LMJLV39_SCAF000078, LMJLV39_SCAF000079, LMJLV39_SCAF000080, LMJLV39_SCAF000081, LMJLV39_SCAF000082, LMJLV39_SCAF000083, LMJLV39_SCAF000084, LMJLV39_SCAF000085, LMJLV39_SCAF000086, LMJLV39_SCAF000087, LMJLV39_SCAF000088, LMJLV39_SCAF000089, LMJLV39_SCAF000090, LMJLV39_SCAF000091, LMJLV39_SCAF000092, LMJLV39_SCAF000093, LMJLV39_SCAF000094, LMJLV39_SCAF000095, LMJLV39_SCAF000096, LMJLV39_SCAF000097, LMJLV39_SCAF000098, LMJLV39_SCAF000099, LMJLV39_SCAF000100, LMJLV39_SCAF000101, LMJLV39_SCAF000102, LMJLV39_SCAF000103, LMJLV39_SCAF000104, LMJLV39_SCAF000105, LMJLV39_SCAF000106, LMJLV39_SCAF000107, LMJLV39_SCAF000108, LMJLV39_SCAF000109, LMJLV39_SCAF000110, LMJLV39_SCAF000111, LMJLV39_SCAF000112, LMJLV39_SCAF000113, LMJLV39_SCAF000114, LMJLV39_SCAF000115, LMJLV39_SCAF000116, LMJLV39_SCAF000117, LMJLV39_SCAF000118, LMJLV39_SCAF000119, LMJLV39_SCAF000120, LMJLV39_SCAF000121, LMJLV39_SCAF000122, LMJLV39_SCAF000123, LMJLV39_SCAF000124, LMJLV39_SCAF000125, LMJLV39_SCAF000126, LMJLV39_SCAF000127, LMJLV39_SCAF000128, LMJLV39_SCAF000129, LMJLV39_SCAF000130, LMJLV39_SCAF000131, LMJLV39_SCAF000132, LMJLV39_SCAF000133, LMJLV39_SCAF000134, LMJLV39_SCAF000135, LMJLV39_SCAF000136, LMJLV39_SCAF000137, LMJLV39_SCAF000138, LMJLV39_SCAF000139, LMJLV39_SCAF000140, LMJLV39_SCAF000141, LMJLV39_SCAF000142, LMJLV39_SCAF000143, LMJLV39_SCAF000144, LMJLV39_SCAF000145, LMJLV39_SCAF000146, LMJLV39_SCAF000147, LMJLV39_SCAF000148, LMJLV39_SCAF000149, LMJLV39_SCAF000150, LMJLV39_SCAF000151, LMJLV39_SCAF000152, LMJLV39_SCAF000153, LMJLV39_SCAF000154, LMJLV39_SCAF000155, LMJLV39_SCAF000156, LMJLV39_SCAF000157, LMJLV39_SCAF000158, LMJLV39_SCAF000159, LMJLV39_SCAF000160, LMJLV39_SCAF000161, LMJLV39_SCAF000162, LMJLV39_SCAF000163, LMJLV39_SCAF000164, LMJLV39_SCAF000165, LMJLV39_SCAF000166, LMJLV39_SCAF000167, LMJLV39_SCAF000168, LMJLV39_SCAF000169, LMJLV39_SCAF000170, LMJLV39_SCAF000171, LMJLV39_SCAF000172, LMJLV39_SCAF000173, LMJLV39_SCAF000174, LMJLV39_SCAF000175, LMJLV39_SCAF000176, LMJLV39_SCAF000177, LMJLV39_SCAF000178, LMJLV39_SCAF000179, LMJLV39_SCAF000180, LMJLV39_SCAF000181, LMJLV39_SCAF000182, LMJLV39_SCAF000183, LMJLV39_SCAF000184, LMJLV39_SCAF000185, LMJLV39_SCAF000186, LMJLV39_SCAF000187, LMJLV39_SCAF000188, LMJLV39_SCAF000189, LMJLV39_SCAF000190, LMJLV39_SCAF000191, LMJLV39_SCAF000192, LMJLV39_SCAF000193, LMJLV39_SCAF000194, LMJLV39_SCAF000195, LMJLV39_SCAF000196, LMJLV39_SCAF000197, LMJLV39_SCAF000198, LMJLV39_SCAF000199, LMJLV39_SCAF000200, LMJLV39_SCAF000201, LMJLV39_SCAF000202, LMJLV39_SCAF000203, LMJLV39_SCAF000204, LMJLV39_SCAF000205, LMJLV39_SCAF000206, LMJLV39_SCAF000207, LMJLV39_SCAF000208, LMJLV39_SCAF000209, LMJLV39_SCAF000210, LMJLV39_SCAF000211, LMJLV39_SCAF000212, LMJLV39_SCAF000213, LMJLV39_SCAF000214, LMJLV39_SCAF000215, LMJLV39_SCAF000216, LMJLV39_SCAF000217, LMJLV39_SCAF000218, LMJLV39_SCAF000219, LMJLV39_SCAF000220, LMJLV39_SCAF000221, LMJLV39_SCAF000222, LMJLV39_SCAF000223, LMJLV39_SCAF000224, LMJLV39_SCAF000225, LMJLV39_SCAF000226, LMJLV39_SCAF000227, LMJLV39_SCAF000228, LMJLV39_SCAF000229, LMJLV39_SCAF000230, LMJLV39_SCAF000231, LMJLV39_SCAF000232, LMJLV39_SCAF000233, LMJLV39_SCAF000234, LMJLV39_SCAF000235, LMJLV39_SCAF000236, LMJLV39_SCAF000237, LMJLV39_SCAF000238, LMJLV39_SCAF000239, LMJLV39_SCAF000240, LMJLV39_SCAF000241, LMJLV39_SCAF000242, LMJLV39_SCAF000243, LMJLV39_SCAF000244, LMJLV39_SCAF000245, LMJLV39_SCAF000246, LMJLV39_SCAF000247, LMJLV39_SCAF000248, LMJLV39_SCAF000249, LMJLV39_SCAF000250, LMJLV39_SCAF000251, LMJLV39_SCAF000252, LMJLV39_SCAF000253, LMJLV39_SCAF000254, LMJLV39_SCAF000255, LMJLV39_SCAF000256, LMJLV39_SCAF000257, LMJLV39_SCAF000258, LMJLV39_SCAF000259, LMJLV39_SCAF000260, LMJLV39_SCAF000261, LMJLV39_SCAF000262, LMJLV39_SCAF000263, LMJLV39_SCAF000264, LMJLV39_SCAF000265, LMJLV39_SCAF000266, LMJLV39_SCAF000267, LMJLV39_SCAF000268, LMJLV39_SCAF000269, LMJLV39_SCAF000270, LMJLV39_SCAF000271, LMJLV39_SCAF000272, LMJLV39_SCAF000273, LMJLV39_SCAF000274, LMJLV39_SCAF000275, LMJLV39_SCAF000276, LMJLV39_SCAF000277, LMJLV39_SCAF000278, LMJLV39_SCAF000279, LMJLV39_SCAF000280, LMJLV39_SCAF000281, LMJLV39_SCAF000282, LMJLV39_SCAF000283, LMJLV39_SCAF000284, LMJLV39_SCAF000285, LMJLV39_SCAF000286, LMJLV39_SCAF000287, LMJLV39_SCAF000288, LMJLV39_SCAF000289, LMJLV39_SCAF000290, LMJLV39_SCAF000291, LMJLV39_SCAF000292, LMJLV39_SCAF000293, LMJLV39_SCAF000294, LMJLV39_SCAF000295, LMJLV39_SCAF000296, LMJLV39_SCAF000297, LMJLV39_SCAF000298, LMJLV39_SCAF000299, LMJLV39_SCAF000300, LMJLV39_SCAF000301, LMJLV39_SCAF000302, LMJLV39_SCAF000303, LMJLV39_SCAF000304, LMJLV39_SCAF000305, LMJLV39_SCAF000306, LMJLV39_SCAF000307, LMJLV39_SCAF000308, LMJLV39_SCAF000309, LMJLV39_SCAF000310, LMJLV39_SCAF000311, LMJLV39_SCAF000312, LMJLV39_SCAF000313, LMJLV39_SCAF000314, LMJLV39_SCAF000315, LMJLV39_SCAF000316, LMJLV39_SCAF000317, LMJLV39_SCAF000318, LMJLV39_SCAF000319, LMJLV39_SCAF000320, LMJLV39_SCAF000321, LMJLV39_SCAF000322, LMJLV39_SCAF000323, LMJLV39_SCAF000324, LMJLV39_SCAF000325, LMJLV39_SCAF000326, LMJLV39_SCAF000327, LMJLV39_SCAF000328, LMJLV39_SCAF000329, LMJLV39_SCAF000330, LMJLV39_SCAF000331, LMJLV39_SCAF000332, LMJLV39_SCAF000333, LMJLV39_SCAF000334, LMJLV39_SCAF000335, LMJLV39_SCAF000336, LMJLV39_SCAF000337, LMJLV39_SCAF000338, LMJLV39_SCAF000339, LMJLV39_SCAF000340, LMJLV39_SCAF000341, LMJLV39_SCAF000342, LMJLV39_SCAF000343, LMJLV39_SCAF000344, LMJLV39_SCAF000345, LMJLV39_SCAF000346, LMJLV39_SCAF000347, LMJLV39_SCAF000348, LMJLV39_SCAF000349, LMJLV39_SCAF000350, LMJLV39_SCAF000351, LMJLV39_SCAF000352, LMJLV39_SCAF000353, LMJLV39_SCAF000354, LMJLV39_SCAF000355, LMJLV39_SCAF000356, LMJLV39_SCAF000357, LMJLV39_SCAF000358, LMJLV39_SCAF000359, LMJLV39_SCAF000360, LMJLV39_SCAF000361, LMJLV39_SCAF000362, LMJLV39_SCAF000363, LMJLV39_SCAF000364, LMJLV39_SCAF000365, LMJLV39_SCAF000366, LMJLV39_SCAF000367, LMJLV39_SCAF000368, LMJLV39_SCAF000369, LMJLV39_SCAF000370, LMJLV39_SCAF000371, LMJLV39_SCAF000372, LMJLV39_SCAF000373, LMJLV39_SCAF000374, LMJLV39_SCAF000375, LMJLV39_SCAF000376, LMJLV39_SCAF000377, LMJLV39_SCAF000378, LMJLV39_SCAF000379, LMJLV39_SCAF000380, LMJLV39_SCAF000381, LMJLV39_SCAF000382, LMJLV39_SCAF000383, LMJLV39_SCAF000384, LMJLV39_SCAF000385, LMJLV39_SCAF000386, LMJLV39_SCAF000387, LMJLV39_SCAF000388, LMJLV39_SCAF000389, LMJLV39_SCAF000390, LMJLV39_SCAF000391, LMJLV39_SCAF000392, LMJLV39_SCAF000393, LMJLV39_SCAF000394, LMJLV39_SCAF000395, LMJLV39_SCAF000396, LMJLV39_SCAF000397, LMJLV39_SCAF000398, LMJLV39_SCAF000399, LMJLV39_SCAF000400, LMJLV39_SCAF000401, LMJLV39_SCAF000402, LMJLV39_SCAF000403, LMJLV39_SCAF000404, LMJLV39_SCAF000405, LMJLV39_SCAF000406, LMJLV39_SCAF000407, LMJLV39_SCAF000408, LMJLV39_SCAF000409, LMJLV39_SCAF000410, LMJLV39_SCAF000411, LMJLV39_SCAF000412, LMJLV39_SCAF000413, LMJLV39_SCAF000414, LMJLV39_SCAF000415, LMJLV39_SCAF000416, LMJLV39_SCAF000417, LMJLV39_SCAF000418, LMJLV39_SCAF000419, LMJLV39_SCAF000420, LMJLV39_SCAF000421, LMJLV39_SCAF000422, LMJLV39_SCAF000423, LMJLV39_SCAF000424, LMJLV39_SCAF000425, LMJLV39_SCAF000426, LMJLV39_SCAF000427, LMJLV39_SCAF000428, LMJLV39_SCAF000429, LMJLV39_SCAF000430, LMJLV39_SCAF000431, LMJLV39_SCAF000432, LMJLV39_SCAF000433, LMJLV39_SCAF000434, LMJLV39_SCAF000435, LMJLV39_SCAF000436, LMJLV39_SCAF000437, LMJLV39_SCAF000438, LMJLV39_SCAF000439, LMJLV39_SCAF000440, LMJLV39_SCAF000441, LMJLV39_SCAF000442, LMJLV39_SCAF000443, LMJLV39_SCAF000444, LMJLV39_SCAF000445, LMJLV39_SCAF000446, LMJLV39_SCAF000447, LMJLV39_SCAF000448, LMJLV39_SCAF000449, LMJLV39_SCAF000450, LMJLV39_SCAF000451, LMJLV39_SCAF000452, LMJLV39_SCAF000453, LMJLV39_SCAF000454, LMJLV39_SCAF000455, LMJLV39_SCAF000456, LMJLV39_SCAF000457, LMJLV39_SCAF000458, LMJLV39_SCAF000459, LMJLV39_SCAF000460, LMJLV39_SCAF000461, LMJLV39_SCAF000462, LMJLV39_SCAF000463, LMJLV39_SCAF000464, LMJLV39_SCAF000465, LMJLV39_SCAF000466, LMJLV39_SCAF000467, LMJLV39_SCAF000468, LMJLV39_SCAF000469, LMJLV39_SCAF000470, LMJLV39_SCAF000471, LMJLV39_SCAF000472, LMJLV39_SCAF000473, LMJLV39_SCAF000474, LMJLV39_SCAF000475, LMJLV39_SCAF000476, LMJLV39_SCAF000477, LMJLV39_SCAF000478, LMJLV39_SCAF000479, LMJLV39_SCAF000480, LMJLV39_SCAF000481, LMJLV39_SCAF000482, LMJLV39_SCAF000483, LMJLV39_SCAF000484, LMJLV39_SCAF000485, LMJLV39_SCAF000486, LMJLV39_SCAF000487, LMJLV39_SCAF000488, LMJLV39_SCAF000489, LMJLV39_SCAF000490, LMJLV39_SCAF000491, LMJLV39_SCAF000492, LMJLV39_SCAF000493, LMJLV39_SCAF000494, LMJLV39_SCAF000495, LMJLV39_SCAF000496, LMJLV39_SCAF000497, LMJLV39_SCAF000498, LMJLV39_SCAF000499, LMJLV39_SCAF000500, LMJLV39_SCAF000501, LMJLV39_SCAF000502, LMJLV39_SCAF000503, LMJLV39_SCAF000504, LMJLV39_SCAF000505, LMJLV39_SCAF000506, LMJLV39_SCAF000507, LMJLV39_SCAF000508, LMJLV39_SCAF000509, LMJLV39_SCAF000510, LMJLV39_SCAF000511, LMJLV39_SCAF000512, LMJLV39_SCAF000513, LMJLV39_SCAF000514, LMJLV39_SCAF000515, LMJLV39_SCAF000516, LMJLV39_SCAF000517, LMJLV39_SCAF000518, LMJLV39_SCAF000519, LMJLV39_SCAF000520, LMJLV39_SCAF000521, LMJLV39_SCAF000522, LMJLV39_SCAF000523, LMJLV39_SCAF000524, LMJLV39_SCAF000525, LMJLV39_SCAF000526, LMJLV39_SCAF000527, LMJLV39_SCAF000528, LMJLV39_SCAF000529, LMJLV39_SCAF000530, LMJLV39_SCAF000531, LMJLV39_SCAF000532, LMJLV39_SCAF000533, LMJLV39_SCAF000534, LMJLV39_SCAF000535, LMJLV39_SCAF000536, LMJLV39_SCAF000537, LMJLV39_SCAF000538, LMJLV39_SCAF000539, LMJLV39_SCAF000540, LMJLV39_SCAF000541, LMJLV39_SCAF000542, LMJLV39_SCAF000543, LMJLV39_SCAF000544, LMJLV39_SCAF000545, LMJLV39_SCAF000546, LMJLV39_SCAF000547, LMJLV39_SCAF000548, LMJLV39_SCAF000549, LMJLV39_SCAF000550, LMJLV39_SCAF000551, LMJLV39_SCAF000552, LMJLV39_SCAF000553, LMJLV39_SCAF000554, LMJLV39_SCAF000555, LMJLV39_SCAF000556, LMJLV39_SCAF000557, LMJLV39_SCAF000558, LMJLV39_SCAF000559, LMJLV39_SCAF000560, LMJLV39_SCAF000561, LMJLV39_SCAF000562, LMJLV39_SCAF000563, LMJLV39_SCAF000564, LMJLV39_SCAF000565, LMJLV39_SCAF000566, LMJLV39_SCAF000567, LMJLV39_SCAF000568, LMJLV39_SCAF000569, LMJLV39_SCAF000570, LMJLV39_SCAF000571, LMJLV39_SCAF000572, LMJLV39_SCAF000573, LMJLV39_SCAF000574, LMJLV39_SCAF000575, LMJLV39_SCAF000576, LMJLV39_SCAF000577, LMJLV39_SCAF000578, LMJLV39_SCAF000579, LMJLV39_SCAF000580, LMJLV39_SCAF000581, LMJLV39_SCAF000582, LMJLV39_SCAF000583, LMJLV39_SCAF000584, LMJLV39_SCAF000585, LMJLV39_SCAF000586, LMJLV39_SCAF000587, LMJLV39_SCAF000588, LMJLV39_SCAF000589, LMJLV39_SCAF000590, LMJLV39_SCAF000591, LMJLV39_SCAF000592, LMJLV39_SCAF000593, LMJLV39_SCAF000594, LMJLV39_SCAF000595, LMJLV39_SCAF000596, LMJLV39_SCAF000597, LMJLV39_SCAF000598, LMJLV39_SCAF000599, LMJLV39_SCAF000600, LMJLV39_SCAF000601, LMJLV39_SCAF000602, LMJLV39_SCAF000603, LMJLV39_SCAF000604, LMJLV39_SCAF000605, LMJLV39_SCAF000606, LMJLV39_SCAF000607, LMJLV39_SCAF000608, LMJLV39_SCAF000609, LMJLV39_SCAF000610, LMJLV39_SCAF000611, LMJLV39_SCAF000612, LMJLV39_SCAF000613, LMJLV39_SCAF000614, LMJLV39_SCAF000615, LMJLV39_SCAF000616, LMJLV39_SCAF000617, LMJLV39_SCAF000618, LMJLV39_SCAF000619, LMJLV39_SCAF000620, LMJLV39_SCAF000621, LMJLV39_SCAF000622, LMJLV39_SCAF000623, LMJLV39_SCAF000624, LMJLV39_SCAF000625, LMJLV39_SCAF000626, LMJLV39_SCAF000627, LMJLV39_SCAF000628, LMJLV39_SCAF000629, LMJLV39_SCAF000630, LMJLV39_SCAF000631, LMJLV39_SCAF000632, LMJLV39_SCAF000633, LMJLV39_SCAF000634, LMJLV39_SCAF000635, LMJLV39_SCAF000636, LMJLV39_SCAF000637, LMJLV39_SCAF000638, LMJLV39_SCAF000639, LMJLV39_SCAF000640, LMJLV39_SCAF000641, LMJLV39_SCAF000642, LMJLV39_SCAF000643, LMJLV39_SCAF000644, LMJLV39_SCAF000645, LMJLV39_SCAF000646, LMJLV39_SCAF000647, LMJLV39_SCAF000648, LMJLV39_SCAF000649, LMJLV39_SCAF000650, LMJLV39_SCAF000651, LMJLV39_SCAF000652, LMJLV39_SCAF000653, LMJLV39_SCAF000654, LMJLV39_SCAF000655, LMJLV39_SCAF000656, LMJLV39_SCAF000657, LMJLV39_SCAF000658, LMJLV39_SCAF000659, LMJLV39_SCAF000660, LMJLV39_SCAF000661, LMJLV39_SCAF000662, LMJLV39_SCAF000663, LMJLV39_SCAF000664, LMJLV39_SCAF000665, LMJLV39_SCAF000666, LMJLV39_SCAF000667, LMJLV39_SCAF000668, LMJLV39_SCAF000669, LMJLV39_SCAF000670, LMJLV39_SCAF000671, LMJLV39_SCAF000672, LMJLV39_SCAF000673, LMJLV39_SCAF000674, LMJLV39_SCAF000675, LMJLV39_SCAF000676, LMJLV39_SCAF000677, LMJLV39_SCAF000678, LMJLV39_SCAF000679, LMJLV39_SCAF000680, LMJLV39_SCAF000681, LMJLV39_SCAF000682, LMJLV39_SCAF000683, LMJLV39_SCAF000684, LMJLV39_SCAF000685, LMJLV39_SCAF000686, LMJLV39_SCAF000687, LMJLV39_SCAF000688, LMJLV39_SCAF000689, LMJLV39_SCAF000690, LMJLV39_SCAF000691, LMJLV39_SCAF000692, LMJLV39_SCAF000693, LMJLV39_SCAF000694, LMJLV39_SCAF000695, LMJLV39_SCAF000696, LMJLV39_SCAF000697, LMJLV39_SCAF000698, LMJLV39_SCAF000699, LMJLV39_SCAF000700, LMJLV39_SCAF000701, LMJLV39_SCAF000702, LMJLV39_SCAF000703, LMJLV39_SCAF000704, LMJLV39_SCAF000705, LMJLV39_SCAF000706, LMJLV39_SCAF000707, LMJLV39_SCAF000708, LMJLV39_SCAF000709, LMJLV39_SCAF000710, LMJLV39_SCAF000711, LMJLV39_SCAF000712, LMJLV39_SCAF000713, LMJLV39_SCAF000714, LMJLV39_SCAF000715, LMJLV39_SCAF000716, LMJLV39_SCAF000717, LMJLV39_SCAF000718, LMJLV39_SCAF000719, LMJLV39_SCAF000720, LMJLV39_SCAF000721, LMJLV39_SCAF000722, LMJLV39_SCAF000723, LMJLV39_SCAF000724, LMJLV39_SCAF000725, LMJLV39_SCAF000726, LMJLV39_SCAF000727, LMJLV39_SCAF000728, LMJLV39_SCAF000729, LMJLV39_SCAF000730, LMJLV39_SCAF000731, LMJLV39_SCAF000732, LMJLV39_SCAF000733, LMJLV39_SCAF000734, LMJLV39_SCAF000735, LMJLV39_SCAF000736, LMJLV39_SCAF000737, LMJLV39_SCAF000738, LMJLV39_SCAF000739, LMJLV39_SCAF000740, LMJLV39_SCAF000741, LMJLV39_SCAF000742, LMJLV39_SCAF000743, LMJLV39_SCAF000744, LMJLV39_SCAF000745, LMJLV39_SCAF000746, LMJLV39_SCAF000747, LMJLV39_SCAF000748, LMJLV39_SCAF000749, LMJLV39_SCAF000750, LMJLV39_SCAF000751, LMJLV39_SCAF000752, LMJLV39_SCAF000753, LMJLV39_SCAF000754, LMJLV39_SCAF000755, LMJLV39_SCAF000756, LMJLV39_SCAF000757, LMJLV39_SCAF000758, LMJLV39_SCAF000759, LMJLV39_SCAF000760, LMJLV39_SCAF000761, LMJLV39_SCAF000762, LMJLV39_SCAF000763, LMJLV39_SCAF000764, LMJLV39_SCAF000765, LMJLV39_SCAF000766, LMJLV39_SCAF000767, LMJLV39_SCAF000768, LMJLV39_SCAF000769, LMJLV39_SCAF000770, LMJLV39_SCAF000771, LMJLV39_SCAF000772, LMJLV39_SCAF000773]
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how should I fix it