Add malaria spanning deletion exception regression test with fix

broadinstitute / gatk

Official code repository for GATK versions 4 and up

https://software.broadinstitute.org/gatk

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Closed ldgauthier closed 1 month ago

ldgauthier commented 1 month ago

GGVCFs GQ0 homref to no-call fix broke some reblocking behavior -- here's the fix