broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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Docker untangling [VS-1279] #8805

Closed mcovarr closed 1 month ago

mcovarr commented 1 month ago

Some of the Docker work from ah_var_store needs to be on EchoCallset to be able to do the PGEN subsets, particularly the PLINK Docker and GAR changes upon which the PLINK Docker changes depend. I have freshly baked the Variants, PLINK, and Docker images just now for this PR. 👨‍🍳

Integration run in progress here https://app.terra.bio/#workspaces/gvs-dev/GVS%20Integration/job_history/2585a1b6-c5da-48f0-a196-b5679e7f40a5