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broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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Adding arg to VariantFiltration to write your own description in Header #8831

Closed meganshand closed 1 month ago

meganshand commented 1 month ago

This allows the user to write their own description in the FILTER line in the header. Currently a user can define an interval list to filter with and name that filter, but the description line is always "Doesn't overlap a user-input mask" or "Overlaps a user-input mask", whereas it might be more useful to let the user provide a more detailed description (for example, "Outside of sequencing target intervals").

meganshand commented 1 month ago

@droazen could you please suggest a reviewer?