Update Script to Handle Both Files and FOFN [VS-1441] - Githubissues

broadinstitute / gatk

Official code repository for GATK versions 4 and up

https://software.broadinstitute.org/gatk

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Update Script to Handle Both Files and FOFN [VS-1441] #8954

Closed rsasch closed 3 months ago

rsasch commented 3 months ago

also added it to the PGEN export WDL to analyze performance easier

test run of filter correction: https://app.terra.bio/#workspaces/gvs-dev/RSA%20-%20GVS%20Quickstart%20V2%20/job_history/f7de418a-05c7-4720-8dc9-a997b1cfd456 test run of PGEN extract: https://app.terra.bio/#workspaces/gvs-dev/RSA%20-%20GVS%20Quickstart%20V2%20/job_history/e2b2c875-4cfd-4cbe-879a-18fb91c1518e