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broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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VS-1466 restructure export vcf for copy reasons #8960

Closed gbggrant closed 2 months ago

gbggrant commented 3 months ago

Modify GvsExtractCallset so that you can change the value of 'output_gcs_dir' as an input and it won't cause the extract to be re-run (won't invalidate call caching).

Passing run here. Passing Integration test here.