search

broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
Other
1.71k stars 594 forks source link

VS-1485 - Optionally call CollectVariantCallingMetrics from ExtractVcfs #8968

Closed gbggrant closed 2 months ago

gbggrant commented 2 months ago

Added ability to call gatk tools to collect variant calling metrics. It is optional, and defaulted to not collect.

Passing Extract run with metrics collected here. Passing Extract run where we don't (default) collect metrics here. Passing Integration test here