Update gradle and build.gradle

broadinstitute / gatk

Official code repository for GATK versions 4 and up

https://software.broadinstitute.org/gatk

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Update gradle and build.gradle #8998

Closed lbergelson closed 1 month ago

lbergelson commented 1 month ago

update gradle wrapper 8.2.1 -> 8.10.2
remove 'versions' plugin because we don't use it
update gradle plugins to new versions
- shadow plugin changed maintainers and coordinates com.github.johnrengelman.shadow:8.1.1 -> com.gradleup.shadow:8.3.3
- git-version 0.5.1 -> 3.1.0
- sonatype scan 2.6.1 -> 2.8.3
- download 5.4.0 -> 5.6.0
use tasks.register() which is the newer style

gatk-bot commented 1 month ago

Github actions tests reported job failures from actions build 11334895424 Failures in the following jobs:

Test Type	JDK	Job ID	Logs
cloud	17.0.6+10	11334895424.10	logs
unit	17.0.6+10	11334895424.12	logs
integration	17.0.6+10	11334895424.11	logs

lbergelson commented 1 month ago

@droazen @KevinCLydon If one of you wants to take a look at this that would be great. It updates a bunch of build and housekeeping stuff. It doesn't resolve all the dependency vulnerabilities yet.