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broadinstitute / gatk

Official code repository for GATK versions 4 and up
https://software.broadinstitute.org/gatk
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optional column call_ps #9025

Open yonghaoy opened 3 weeks ago

yonghaoy commented 3 weeks ago

Not sure if this is the right change. We are seeing Unrecognized name: CALL_PS at [4:136] error in AoU genomic workflow

So make this optional, when column is missing, return null