broadinstitute / gdctools

Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
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GDCtools should give user option of employing GDC data transfer tool #23

Open noblem opened 7 years ago

noblem commented 7 years ago

The GDC offers a "high-speed download tool"

https://gdc.cancer.gov/access-data/gdc-data-transfer-tool

GDCtools should probably detect this in user environment and offer option of utilizing it, as long as it does not sacrifice the flexibility of our toolset (e.g. the download tool retrieves by UUID and manifest, and is suitable for large files like BAMs, but may not be as suitable for large collections of smaller, named files)