RFE: enable use of FORMAT argument in gdc_loadfile

broadinstitute / gdctools

Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons

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RFE: enable use of FORMAT argument in gdc_loadfile #51

Closed dheiman closed 7 years ago

dheiman commented 7 years ago

Looking at google.cfg, there is a FORMAT field in the loadfile section set to firecloud, but looking at the codebase, this is never consumed, and gdc_loadfile has no actual code to generate FireCloud loadfiles.

noblem commented 7 years ago

This is nominally operational, as of commit https://github.com/broadinstitute/gdctools/commit/df437aba5baf8d4204a45577d4968ba6bf4e15fe