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broadinstitute / gdctools

Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
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gdc_loadfile is not preserving file paths #52

Closed dheiman closed 6 years ago

dheiman commented 7 years ago

The loadfiles generated by gdc_loadfile only contain file names, but not their locations.

noblem commented 6 years ago

This was introduced during the fix to #42, but surprisingly the regression tests did not catch it (possibly because some of the GDC data changed and the baseline test data had to be updated anyway, which would change the MD5s anyway and mask this)

noblem commented 6 years ago

Fixed by commits https://github.com/broadinstitute/gdctools/commit/391b4257218bbac03bbc868a7858a89d335b4845 and https://github.com/broadinstitute/gdctools/commit/e4692482307698b6da02c7230afa9858c59fff91