search

broadinstitute / genetic-prevalence-estimator

https://genie.broadinstitute.org/
BSD 3-Clause "New" or "Revised" License
1 stars 0 forks source link

Add a flag for genomes only #108

Closed sambaxter closed 2 years ago

sambaxter commented 2 years ago

Is there a way to add a flag to genome only variants?

nawatts commented 2 years ago

We can do that. I don't think we currently store whether a variant is found in exomes/genomes, so it wouldn't be available on variant lists that were created before the change.

sambaxter commented 2 years ago

That is fine. I think it's most helpful when it goes public. Its primary role is to call out to people when it might be the lower denominator that is causing a higher allele frequency

On Fri, Jun 10, 2022 at 12:01 PM Nick Watts @.***> wrote:

We can do that. I don't think we currently store whether a variant is found in exomes/genomes, so it wouldn't be available on variant lists that were created before the change.

— Reply to this email directly, view it on GitHub https://github.com/broadinstitute/aggregate-frequency-calculator/issues/108#issuecomment-1152512294, or unsubscribe https://github.com/notifications/unsubscribe-auth/AESSQ2EYZRXRKX3OJBCOXHLVONREDANCNFSM5YODMYUA . You are receiving this because you authored the thread.Message ID: <broadinstitute/aggregate-frequency-calculator/issues/108/1152512294@ github.com>

--

Samantha Baxter, MS, CGC

Associate Director, Genetic and Genomic Data Sharing

Licensed Genetic Counselor

@. @.>*