Integrate gnomAD v4 data - Githubissues

broadinstitute / genetic-prevalence-estimator

https://genie.broadinstitute.org/

BSD 3-Clause "New" or "Revised" License

1 stars 0 forks source link

Integrate gnomAD v4 data #175

Closed rileyhgrant closed 7 months ago

rileyhgrant commented 7 months ago

Resolves #174

Updates GeniE to ingrate gnomAD v4 data

Updates the variant pulling script to get v4 data
Updates the backend to recognize v4 as a dataset
Updates the frontend to give users option to select v4

This PR out of neccesity also:

Updates the hail version in the worker to be able to read hail tables produced with newer version of hail (needed because v4 needs to be read by the variant pulling script)
Updates the source of jdk for the worker since adoptopenjdk is no longer supported