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broadinstitute / genetic-prevalence-estimator

https://genie.broadinstitute.org/
BSD 3-Clause "New" or "Revised" License
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Error being returned in manual list with single variant. #177

Closed sambaxter closed 10 months ago

sambaxter commented 10 months ago

I tried creating a list with a single v4 variant and copy pasted the gnomAD ID (22-17188355-G-T) but GeniE is giving an error saying hail doesn't recognize this as a position.

image

Hail error "hail.utils.java.FatalError: HailException: Invalid locus '22:17188355' found. Contig '22' is not in the reference genome 'GRCh38'."

List URL: https://genie.broadinstitute.org/variant-lists/362bde83-f3a6-41e3-b815-95c3326bc3f0/

I also tried running the whole gene in GeniE and got another error: "Error summary: OutOfMemoryError: Java heap space"