Change options for ClinVar variants included in gnomAD variant lists

broadinstitute / genetic-prevalence-estimator

https://genie.broadinstitute.org/

BSD 3-Clause "New" or "Revised" License

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Change options for ClinVar variants included in gnomAD variant lists #35

Closed nawatts closed 2 years ago

nawatts commented 3 years ago

Provide two options:

Pathogenic / likely pathogenic
Pathogenic / likely pathogenic + Conflicting (where at least one submission is pathogenic / likely pathogenic)

Related to #29.

nawatts commented 2 years ago

It looks like the desired options are shown, but the behavior of the option to include variants with conflicting interpretations isn't quite right (#84).