Currently, all data is assumed to be at fixed paths under a prefix configured through the DATA_PATH environment variable.
ClinVar data will be updated fairly regularly. If those updates are done by overwriting the ClinVar Hail Tables, they may interfere with any variant list processing that happens to be in progress at that time. Instead, we should write new Hail Tables, configure the app to use them, and then delete the old ones.
Currently, all data is assumed to be at fixed paths under a prefix configured through the
DATA_PATHenvironment variable.ClinVar data will be updated fairly regularly. If those updates are done by overwriting the ClinVar Hail Tables, they may interfere with any variant list processing that happens to be in progress at that time. Instead, we should write new Hail Tables, configure the app to use them, and then delete the old ones.