TBradley27
commented
9 months ago I would also like to echo this sentiment, especially considering such plots are available in the GISTIC2 paper: https://genomebiology.biomedcentral.com/articles/10.1186/gb-2011-12-4-r41/figures/3
Hello, I have been using Gistic2 for a few weeks and usually run it using gene pattern. However, I would like to know how to highlight specific genes (for now I get chromosome locations) to the peaks in the amp/del plot. I have seen presentations and publications with such images. I am sorry for such a lame question.