Initially I ran gistic2 on hiplot platform using 31 samples as an input. Where I got some amplified and deleted peaks. Later, I added one more samples to the segment file and put 32 samples segmented file as an input. It generated all the result files. However, we got a peak that was initially showing deleted, now GISTIC2 is calling the same peak is as amplified.
Hi
Initially I ran gistic2 on hiplot platform using 31 samples as an input. Where I got some amplified and deleted peaks. Later, I added one more samples to the segment file and put 32 samples segmented file as an input. It generated all the result files. However, we got a peak that was initially showing deleted, now GISTIC2 is calling the same peak is as amplified.
Can you please explain this?