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broadinstitute / gnomad-browser

Explore gnomAD datasets on the web
https://gnomad.broadinstitute.org
MIT License
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Cache VEP annotations for ClinVar variants #681

Open nawatts opened 3 years ago

nawatts commented 3 years ago

Caching VEP annotations (instead of re-running VEP on all variants each time) would speed up the ClinVar pipeline. This would be nice for updating ClinVar data more frequently.

nawatts commented 3 years ago

Can possibly copy the Hail Table output by the last run of the VEP task before running the VEP task and use that table as the cache.