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gnomad_local_ancestry
Hail batch pipeline and scripts for local ancestry inference
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Analyze results from chr20 full-pipeline test run
#12
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gtiao
closed
3 years ago
gtiao
commented
4 years ago
From Analysis Google Doc:
Can look at track length distribution, don’t expect lots of short tracks
Visualize results, visualize ancestry karyograms, shouldn’t see lots of switches (see Fig 1, supplementary material for Tractor paper)
Check results against global ancestry estimation (ADMIXTURE)
Could also check trios within the populations -- could sanity check these
From Analysis Google Doc: