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broadinstitute / gnomad_local_ancestry

Hail batch pipeline and scripts for local ancestry inference
MIT License
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Update subsetting script to work with AFR and HGDP + TGP #134

Closed mike-w-wilson closed 2 months ago

mike-w-wilson commented 8 months ago

The current subset script works with a list of sample names. It should be improved to accept a genetic ancestry group and optional TGP + HGDP samples. New annotations and metadata should be exported as well for hand off.